STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000007685Small nuclear RNA activating complex, polypeptide 1b. (281 aa)    
Predicted Functional Partners:
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
 0.976
snapc4
Uncharacterized protein.
    
 0.975
snapc5
Small nuclear RNA activating complex, polypeptide 5.
    
 0.971
gtf2b
General transcription factor IIB.
    
 0.908
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.811
tbp
TATA box binding protein.
   
 0.778
LOC111237051
Uncharacterized protein.
   
 0.778
tbpl2
TATA box binding protein like 2.
   
 0.778
gtf2a1
General transcription factor IIA, 1.
    
  0.775
gtf2a1l
General transcription factor IIA, 1-like.
    
  0.698
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.