Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcc5ATP-binding cassette, sub-family C (CFTR/MRP), member 5. (1100 aa)    
Predicted Functional Partners:
abcc3
ATP-binding cassette, sub-family C (CFTR/MRP), member 3.
  
  
0.923
LOC111232369
Si:ch211-221f10.2.
  
  
 
0.901
Abcc5
Uncharacterized protein.
 
     0.523
gopc
Golgi-associated PDZ and coiled-coil motif containing.
    
 0.520
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.519
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.508
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.507
LOC111217580
Intersectin 2b.
    
 0.440
itsn2
Intersectin 2a.
    
 0.440
LOC111216870
ATP-binding cassette, sub-family G (WHITE), member 1.
   
 0.431
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (26%) [HD]