STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ellElongation factor RNA polymerase II. (645 aa)    
Predicted Functional Partners:
eaf1
ELL associated factor 1.
    
 0.912
aff4
AF4/FMR2 family, member 4.
   
 0.877
eaf2
ELL associated factor 2.
    
 0.871
ice2
Interactor of little elongator complex ELL subunit 2.
    
 0.822
ENSSDUP00000033101
Uncharacterized protein.
   
 0.788
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.778
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.735
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.720
LOC111223580
MLLT3 super elongation complex subunit.
    
 0.711
mllt1
MLLT1 super elongation complex subunit a.
    
 0.711
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.