STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc25Coiled-coil domain containing 25. (218 aa)    
Predicted Functional Partners:
iws1
TFIIS N-terminal domain-containing protein.
      
 0.636
srd5a3
Steroid 5 alpha-reductase 3.
      
 0.591
LOC111232754
Retinal outer segment membrane protein 1b.
      
 0.572
tbca
Tubulin-specific chaperone A; Belongs to the TBCA family.
   
    0.511
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.497
uprt
Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).
      
 0.433
NEMF
Nuclear export mediator factor.
   
  
 0.433
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.