STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000007746Tyrosine-protein phosphatase domain-containing protein. (139 aa)    
Predicted Functional Partners:
Ptpn12
Protein tyrosine phosphatase non-receptor type 12.
 
      0.900
ENSSDUP00000007769
Tyrosine-protein phosphatase domain-containing protein.
 
      0.900
matk
Tyrosine-protein kinase.
   
 0.640
CSK
Tyrosine-protein kinase.
   
 0.640
LOC111229549
Tyrosine-protein kinase.
   
 0.640
LOC111221465
Proline-serine-threonine phosphatase interacting protein 1b.
   
 
 0.586
pstpip1
Proline-serine-threonine phosphatase interacting protein 1a.
   
 
 0.586
shc1
SHC (Src homology 2 domain containing) transforming protein 1.
   
 0.554
SHC3
SHC adaptor protein 3.
   
 0.554
SHC4
SHC adaptor protein 4.
   
 0.554
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.