STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219861Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family. (523 aa)    
Predicted Functional Partners:
tollip
Toll interacting protein.
    
 
 0.658
LOC111240293
Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.613
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.613
mst1r
Macrophage stimulating 1 receptor b.
    
  0.603
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.603
LOC111222844
Macrophage stimulating 1 receptor a.
    
  0.603
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
     
 0.582
LOC111230774
Uncharacterized protein.
     
 0.582
LOC111239812
RAB guanine nucleotide exchange factor (GEF) 1, like.
     
 0.582
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.560
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.