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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcb9Uncharacterized protein. (813 aa)    
Predicted Functional Partners:
tapbp
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.706
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
  
 0.620
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.591
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.563
LOC111239430
Proteasome subunit beta.
 
 
 0.544
LOC111239429
Proteasome subunit beta 12.
 
 
 0.544
LOC111239148
Proteasome subunit beta.
 
 
 0.451
pdia3
Protein disulfide-isomerase.
   
 0.441
pdia4
Protein disulfide-isomerase.
   
 0.441
LOC111220016
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
 
    
 0.414
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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