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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sacsSacsin molecular chaperone. (4580 aa)    
Predicted Functional Partners:
incenp
Uncharacterized protein.
   
 0.795
LOC111232562
Aurora kinase B; Belongs to the protein kinase superfamily.
   
 0.754
aurka
Aurora kinase A; Belongs to the protein kinase superfamily.
   
 0.754
apaf1
Apoptotic peptidase activating factor 1.
   
 0.713
diablo
Diablo, IAP-binding mitochondrial protein a.
    
 0.677
ENSSDUP00000014588
Uncharacterized protein.
    
 0.677
LOC111232249
Uncharacterized protein.
    
 0.677
LOC111222733
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.667
LOC111218544
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.667
cdca8
Cell division cycle associated 8.
   
 0.667
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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