STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111224271Potassium channel tetramerization domain containing 9b. (403 aa)    
Predicted Functional Partners:
top2a
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.678
ENSSDUP00000015563
HATPase_c domain-containing protein.
   
 
 0.678
Top2b
TOP4c domain-containing protein.
   
 
 0.678
tmem159
Uncharacterized protein.
      
 0.538
rnf24
Ring finger protein 24.
      
 0.489
clrn3
Clarin 3.
      
 0.474
ubox5
U-box domain containing 5.
      
 0.469
LOC111224075
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.464
CUL3
Cullin 3; Belongs to the cullin family.
    
 
 0.464
KCTD21
Potassium channel tetramerization domain containing 21.
      
0.461
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.