STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx3Iroquois homeobox 3a. (426 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
  
 0.653
sall4
Spalt-like transcription factor 4.
      
 0.642
ush2a
Usher syndrome 2A (autosomal recessive, mild).
    
 
 0.605
Gpr84
G protein-coupled receptor 84.
      
 0.603
selenos
Selenoprotein S.
   
  
 0.597
ENSSDUP00000000441
AT rich interactive domain 4A (RBP1-like).
    
 
 0.593
arid4b
Translocase of outer mitochondrial membrane 20.
    
 
 0.593
fto
FTO alpha-ketoglutarate dependent dioxygenase.
      
 0.592
irx5
Iroquois homeobox 5a.
  
  
0.576
LOC111233736
Homeobox domain-containing protein.
  
  
0.567
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.