STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccndbp1Cyclin D-type binding-protein 1. (344 aa)    
Predicted Functional Partners:
syf2
SYF2 pre-mRNA-splicing factor.
    
 
 0.646
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.614
mrpl55
Zgc:171480.
      
 0.569
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.545
bard1
BRCA1 associated RING domain 1.
    
 0.516
tfpt
TCF3 (E2A) fusion partner.
    
 
 0.492
ENSSDUP00000028854
Uncharacterized protein.
      
 0.470
LOC111235891
GRB2 related adaptor protein 2b.
    
 
 0.468
grap2
GRB2 related adaptor protein 2a.
    
 
 0.468
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.463
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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