STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111235676Uncharacterized protein. (273 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.635
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.593
rps27a
Ribosomal protein S27a.
    
 0.584
birc6
Baculoviral IAP repeat containing 6.
    
 0.529
ENSSDUP00000030530
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.529
ENSSDUP00000009749
Ubiquitin-like domain-containing protein.
    
  0.480
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.480
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.480
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.462
rnf7
Ring finger protein 7.
    
 0.462
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.