STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMP4BCharged multivesicular body protein 4B. (222 aa)    
Predicted Functional Partners:
pdcd6ip
BRO1 domain-containing protein.
   
 0.987
chmp7
Charged multivesicular body protein 7.
    
 0.983
chmp3
Charged multivesicular body protein 3.
   
 0.954
MLKL
Mixed lineage kinase domain like pseudokinase.
    
 0.902
ist1
IST1 factor associated with ESCRT-III.
    
 0.886
LOC111240089
Uncharacterized protein.
   
 0.885
ENSSDUP00000012498
Charged multivesicular body protein 2A.
   
 0.885
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.880
chmp6
Charged multivesicular body protein 6.
    
0.868
LOC111227195
Charged multivesicular body protein 6a.
    
0.868
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.