STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp10Low density lipoprotein receptor-related protein 10. (809 aa)    
Predicted Functional Partners:
LOC111217580
Intersectin 2b.
    
 0.632
itsn2
Intersectin 2a.
    
 0.632
RELN
Reelin.
    
 0.565
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.527
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
      
 0.495
ENSSDUP00000022124
Si:dkey-175m17.7.
  
 
  0.459
ENSSDUP00000025682
Uncharacterized protein.
  
     0.453
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.445
fkrp
Fukutin related protein.
     
 0.436
kdf1
Keratinocyte differentiation factor 1a.
  
     0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.