STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sema6bSema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb; Belongs to the semaphorin family. (886 aa)    
Predicted Functional Partners:
mst1r
Macrophage stimulating 1 receptor b.
    
 0.621
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.621
LOC111222844
Macrophage stimulating 1 receptor a.
    
 0.621
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.615
plxna3
Plexin A3.
    
 0.438
LOC111234907
Plexin A2.
    
 0.438
plxna4
Plexin A4.
    
 0.438
LOC111221308
Plexin b1a.
    
0.438
LOC111221708
Plexin b1b.
    
0.438
PLXND1
Plexin D1.
    
 0.438
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.