STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub1Transmembrane and ubiquitin-like domain containing 1. (277 aa)    
Predicted Functional Partners:
rnf170
Ring finger protein 170.
    
 
 0.667
LOC111228583
ER lipid raft associated 2.
    
 
 0.622
LOC111235074
ER lipid raft associated 1.
    
 
 0.622
Cunh6orf120
Zgc:77929.
      
 0.600
tmub2
Transmembrane and ubiquitin-like domain containing 2.
  
 
 
0.575
ENSSDUP00000006120
Transmembrane protein 126A.
      
 0.573
tmem259
Transmembrane protein 259.
    
 
 0.571
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
   
  
 0.526
rnf185
Ring finger protein 185.
    
 
 0.515
RNF5
Ring finger protein 5.
    
 
 0.515
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.