STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111234489Alkaline phosphatase. (536 aa)    
Predicted Functional Partners:
ENSSDUP00000000159
GTP_cyclohydroI domain-containing protein.
   
 
  0.900
ntpcr
Nucleoside-triphosphatase, cancer-related.
     
  0.900
pts
6-pyruvoyl tetrahydrobiopterin synthase.
     
  0.900
LOC111220316
GTP cyclohydrolase 2.
   
 
  0.900
psat1
Phosphoserine aminotransferase.
     
 0.745
trip11
Thyroid hormone receptor interactor 11.
   
 0.552
LOC111238989
Serine--pyruvate aminotransferase.
     
 0.504
agxt
Serine--pyruvate aminotransferase.
     
 0.504
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
 0.502
LOC111231071
NAD kinase b.
   
 
  0.478
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.