STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RARARetinoic acid receptor alpha. (488 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
    
 0.694
rxra
Retinoid X receptor, alpha a.
   
0.647
ncor1
Nuclear receptor corepressor 1.
    
 0.630
ncor2
Nuclear receptor corepressor 2.
    
 0.630
ENSSDUP00000000930
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
    
 0.614
jun
BZIP domain-containing protein; Belongs to the bZIP family.
    
 0.612
LOC111238777
Retinoid x receptor, beta b.
   
0.600
LOC111232127
Uncharacterized protein.
   
0.600
RXRB
Uncharacterized protein.
   
0.600
LOC111225028
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.
   
 
 0.564
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.