STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222585Tumor necrosis factor b (TNF superfamily, member 2). (254 aa)    
Predicted Functional Partners:
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.971
jun
BZIP domain-containing protein; Belongs to the bZIP family.
   
 0.908
rela
V-rel avian reticuloendotheliosis viral oncogene homolog A.
     
 0.901
LOC111223963
Tumor necrosis factor receptor superfamily, member 1B.
     
  0.900
LOC111234934
CD40 molecule, TNF receptor superfamily member 5.
  
 0.753
LOC111233789
Uncharacterized protein.
   
 0.697
ltbr
Uncharacterized protein.
   
 0.697
LOC111230657
Uncharacterized protein.
   
 0.697
LOC111236981
Uncharacterized protein.
   
 0.697
TNFRSF11B
TNF receptor superfamily member 11b.
   
 0.697
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.