STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg7SPG7 matrix AAA peptidase subunit, paraplegin. (806 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.930
LOC111238450
Prohibitin.
   
 0.853
LOC111239854
Prohibitin.
   
 0.853
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.807
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
  
 0.789
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.783
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.770
afg3l2
AFG3-like AAA ATPase 2.
  
 
0.765
LOC111235932
Si:ch1073-174d20.2; Belongs to the AAA ATPase family.
  
 
0.761
LOC111218505
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 
0.761
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.