STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111226800Zgc:66447. (581 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.779
mnd1
Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.
      
 0.590
mkln1
Muskelin 1, intracellular mediator containing kelch motifs.
      
 0.567
LOC111218510
RAN binding protein 2.
   
 
  0.514
ckap5
Cytoskeleton associated protein 5.
    
 
 0.509
rnf6
Ring finger protein (C3H2C3 type) 6.
    
 
 0.501
gle1
GLE1 RNA export mediator.
    
 0.472
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.441
plagl2
Pleiomorphic adenoma gene-like 2.
    
 
 0.440
atp8a2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
 
 0.440
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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