STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube4bUbiquitination factor E4B, UFD2 homolog (S. cerevisiae). (1332 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.959
yod1
YOD1 deubiquitinase.
    
 
 0.937
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.935
LOC111229268
Zgc:136908; Belongs to the AAA ATPase family.
  
 
 0.882
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.882
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.878
faap100
Si:dkey-57h18.1.
    
 
 0.841
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.841
LOC111222607
Uncharacterized protein.
   
 0.837
UBQLN4
Ubiquilin 4.
   
 0.837
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.