STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TATDN3TatD DNase domain containing 3. (270 aa)    
Predicted Functional Partners:
mblac1
Metallo-beta-lactamase domain containing 1.
      
 0.517
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
  
 0.502
ENSSDUP00000021160
Si:ch211-220f12.4.
      
 0.471
LOC111229101
Otolin 1a.
      
 0.471
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
      
 0.470
yars1
Tyrosine--tRNA ligase.
  
 
 0.439
skap2
Src kinase associated phosphoprotein 2.
      
 0.428
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
     
 0.426
traip
TRAF-interacting protein.
      
 0.426
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
      
 0.420
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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