STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rft1Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family. (541 aa)    
Predicted Functional Partners:
alg1
ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase.
   
 
 0.719
alg2
ALG2 alpha-1,3/1,6-mannosyltransferase.
   
 
 0.674
Alg13
Zgc:92907.
      
 0.602
tor3a
Torsin family 3, member A.
      
 0.591
LOC111237946
Uncharacterized protein.
   
 
 0.582
LOC111238722
ALG11 alpha-1,2-mannosyltransferase.
   
 
 0.582
LOC111237584
ALG13 UDP-N-acetylglucosaminyltransferase subunit.
      
 0.573
LOC111239430
Proteasome subunit beta.
 
      0.570
acp1
LMWPc domain-containing protein.
      
 0.537
LOC111239429
Proteasome subunit beta 12.
 
      0.530
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.