STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc39a13Solute carrier family 39 member 13. (382 aa)    
Predicted Functional Partners:
slc30a4
Solute carrier family 30 member 4.
   
 0.678
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.656
slc30a6
Solute carrier family 30 member 6.
   
 0.640
slc30a5
Solute carrier family 30 member 5.
   
 0.637
slc30a7
Solute carrier family 30 member 7.
   
 0.635
slc39a9
Solute carrier family 39 member 9.
    
 
 0.606
SLC39A11
Solute carrier family 39 member 11.
      
 0.593
LOC111237204
Uncharacterized protein.
      
 0.557
LOC111223408
Extracellular matrix protein 1a.
      
 0.557
bms1
BMS1 ribosome biogenesis factor.
      
 0.556
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.