STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111232127Uncharacterized protein. (453 aa)    
Predicted Functional Partners:
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
0.917
LOC111227597
Nuclear receptor subfamily 1, group H, member 5.
   
0.801
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
0.801
ncor1
Nuclear receptor corepressor 1.
    
 0.787
ncor2
Nuclear receptor corepressor 2.
    
 0.787
med1
Mediator complex subunit 1.
    
 0.773
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.761
PPARA
Peroxisome proliferator-activated receptor alpha b.
    
0.761
ppard
Peroxisome proliferator-activated receptor delta b.
    
0.742
nr1i2
Nuclear receptor subfamily 1, group I, member 2.
    
0.736
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.