Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC111219788 | LOC111221715 | ENSSDUP00000006958 | ENSSDUP00000010957 | CCZ1 homolog, vacuolar protein trafficking and biogenesis associated. | Uncharacterized protein. | 0.890 |
LOC111221504 | LOC111221715 | ENSSDUP00000027267 | ENSSDUP00000010957 | Si:dkey-13a21.4. | Uncharacterized protein. | 0.928 |
LOC111221504 | LOC111223011 | ENSSDUP00000027267 | ENSSDUP00000010557 | Si:dkey-13a21.4. | Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. | 0.800 |
LOC111221504 | LOC111224134 | ENSSDUP00000027267 | ENSSDUP00000004001 | Si:dkey-13a21.4. | Rab interacting lysosomal protein. | 0.900 |
LOC111221504 | LOC111231173 | ENSSDUP00000027267 | ENSSDUP00000020181 | Si:dkey-13a21.4. | FYVE and coiled-coil domain containing 1b. | 0.900 |
LOC111221504 | LOC111232142 | ENSSDUP00000027267 | ENSSDUP00000010694 | Si:dkey-13a21.4. | FYVE and coiled-coil domain containing 1a. | 0.900 |
LOC111221504 | LOC111239516 | ENSSDUP00000027267 | ENSSDUP00000032419 | Si:dkey-13a21.4. | Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. | 0.527 |
LOC111221504 | dync1li2 | ENSSDUP00000027267 | ENSSDUP00000009388 | Si:dkey-13a21.4. | Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. | 0.800 |
LOC111221504 | tbc1d15 | ENSSDUP00000027267 | ENSSDUP00000000339 | Si:dkey-13a21.4. | TBC1 domain family, member 15. | 0.931 |
LOC111221504 | tbc1d17 | ENSSDUP00000027267 | ENSSDUP00000030309 | Si:dkey-13a21.4. | TBC1 domain family, member 17. | 0.931 |
LOC111221715 | LOC111219788 | ENSSDUP00000010957 | ENSSDUP00000006958 | Uncharacterized protein. | CCZ1 homolog, vacuolar protein trafficking and biogenesis associated. | 0.890 |
LOC111221715 | LOC111221504 | ENSSDUP00000010957 | ENSSDUP00000027267 | Uncharacterized protein. | Si:dkey-13a21.4. | 0.928 |
LOC111221715 | LOC111223011 | ENSSDUP00000010957 | ENSSDUP00000010557 | Uncharacterized protein. | Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. | 0.893 |
LOC111221715 | LOC111224134 | ENSSDUP00000010957 | ENSSDUP00000004001 | Uncharacterized protein. | Rab interacting lysosomal protein. | 0.972 |
LOC111221715 | LOC111231173 | ENSSDUP00000010957 | ENSSDUP00000020181 | Uncharacterized protein. | FYVE and coiled-coil domain containing 1b. | 0.936 |
LOC111221715 | LOC111232142 | ENSSDUP00000010957 | ENSSDUP00000010694 | Uncharacterized protein. | FYVE and coiled-coil domain containing 1a. | 0.936 |
LOC111221715 | LOC111239516 | ENSSDUP00000010957 | ENSSDUP00000032419 | Uncharacterized protein. | Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. | 0.925 |
LOC111221715 | dync1li2 | ENSSDUP00000010957 | ENSSDUP00000009388 | Uncharacterized protein. | Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. | 0.893 |
LOC111221715 | tbc1d15 | ENSSDUP00000010957 | ENSSDUP00000000339 | Uncharacterized protein. | TBC1 domain family, member 15. | 0.955 |
LOC111221715 | tbc1d17 | ENSSDUP00000010957 | ENSSDUP00000030309 | Uncharacterized protein. | TBC1 domain family, member 17. | 0.955 |
page 1 of 3