STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nufip1C2H2-type domain-containing protein. (598 aa)    
Predicted Functional Partners:
znhit3
Zinc finger, HIT-type containing 3.
    
 
 0.657
ZNHIT6
Zinc finger HIT-type containing 6.
   
 
 0.623
pih1d1
PIH1 domain containing 1.
    
 
 0.607
eif5
Eukaryotic translation initiation factor 5.
   
  
 0.583
nxf1
Zgc:153681.
    
 
 0.548
rpap3
RNA polymerase II associated protein 3.
   
 0.547
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.452
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.441
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.438
nop56
NOP56 ribonucleoprotein homolog.
    
 
 0.431
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.