STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp20Ubiquitin carboxyl-terminal hydrolase. (948 aa)    
Predicted Functional Partners:
ccp110
Uncharacterized protein.
    
 0.706
lap3
Leucine aminopeptidase 3.
    
 0.667
ENSSDUP00000013979
Adrenoceptor beta 2, surface a.
    
 0.640
Adrb1
Adrenoceptor beta 1.
    
 0.640
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.596
rfc5
Replication factor C (activator 1) 5.
    
 0.587
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.584
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.565
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.558
mrpl21
Uncharacterized protein.
   
 
 0.556
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.