ubr5 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ubr5

Ubiquitin protein ligase E3 component n-recognin 5. (2528 aa)

Predicted Functional Partners:

trip12

0.939

rps27a

0.866

uba52

0.736

LOC111228782

0.736

ubb

0.707

ubc

0.707

USP34

0.689

setd2

0.606

bub3

0.583

LOC111238974

0.578

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111228782	USP34	ENSSDUP00000018383	ENSSDUP00000000972	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	0.841
LOC111228782	rps27a	ENSSDUP00000018383	ENSSDUP00000004225	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.993
LOC111228782	trip12	ENSSDUP00000018383	ENSSDUP00000028582	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Thyroid hormone receptor interactor 12.	0.760
LOC111228782	uba52	ENSSDUP00000018383	ENSSDUP00000013443	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111228782	ubb	ENSSDUP00000018383	ENSSDUP00000009754	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.925
LOC111228782	ubc	ENSSDUP00000018383	ENSSDUP00000023286	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.924
LOC111228782	ubr5	ENSSDUP00000018383	ENSSDUP00000011143	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin protein ligase E3 component n-recognin 5.	0.736
LOC111238974	rps27a	ENSSDUP00000012076	ENSSDUP00000004225	Uncharacterized protein.	Ribosomal protein S27a.	0.644
LOC111238974	ubb	ENSSDUP00000012076	ENSSDUP00000009754	Uncharacterized protein.	Uncharacterized protein.	0.462
LOC111238974	ubc	ENSSDUP00000012076	ENSSDUP00000023286	Uncharacterized protein.	Uncharacterized protein.	0.462
LOC111238974	ubr5	ENSSDUP00000012076	ENSSDUP00000011143	Uncharacterized protein.	Ubiquitin protein ligase E3 component n-recognin 5.	0.578
USP34	LOC111228782	ENSSDUP00000000972	ENSSDUP00000018383	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.841
USP34	rps27a	ENSSDUP00000000972	ENSSDUP00000004225	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Ribosomal protein S27a.	0.927
USP34	setd2	ENSSDUP00000000972	ENSSDUP00000009306	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	SET domain containing 2, histone lysine methyltransferase.	0.772
USP34	trip12	ENSSDUP00000000972	ENSSDUP00000028582	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Thyroid hormone receptor interactor 12.	0.921
USP34	uba52	ENSSDUP00000000972	ENSSDUP00000013443	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.841
USP34	ubb	ENSSDUP00000000972	ENSSDUP00000009754	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.872
USP34	ubc	ENSSDUP00000000972	ENSSDUP00000023286	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.872
USP34	ubr5	ENSSDUP00000000972	ENSSDUP00000011143	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Ubiquitin protein ligase E3 component n-recognin 5.	0.689
bub3	rps27a	ENSSDUP00000025953	ENSSDUP00000004225	BUB3 mitotic checkpoint protein.	Ribosomal protein S27a.	0.686