STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uroc1Urocanate hydratase 1. (675 aa)    
Predicted Functional Partners:
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
 
 0.988
amdhd1
Amidohydrolase domain containing 1.
  
 
 0.981
LOC111225563
Si:ch1073-416d2.3; Belongs to the serpin family.
   
  0.859
ftcd
Formimidoyltransferase cyclodeaminase.
  
  
 0.754
LOC111220196
Threonine aldolase 1.
      
 0.533
bcap31
B cell receptor associated protein 31.
      
 0.465
slc25a10
Solute carrier family 25 member 10; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.418
LOC111229011
Alpha-2-HS-glycoprotein 2.
   
  0.416
LOC111230191
Nucleoside diphosphate kinase.
   
 0.409
LOC111221843
Coiled-coil-helix-coiled-coil-helix domain containing 4a.
 
    
 0.409
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.