STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smim7Small integral membrane protein 7. (75 aa)    
Predicted Functional Partners:
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.977
cog3
Component of oligomeric golgi complex 3.
    
 0.975
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.975
cog2
Component of oligomeric golgi complex 2.
   
 0.970
COG5
Component of oligomeric golgi complex 5.
    
 0.963
cog7
Component of oligomeric golgi complex 7.
    
 0.962
cog1
Component of oligomeric golgi complex 1.
    
 0.961
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.850
vps53
VPS53 subunit of GARP complex.
   
 
 0.822
vps54
VPS54 subunit of GARP complex.
    
 0.821
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.