STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpcpd1Glycerophosphocholine phosphodiesterase 1. (696 aa)    
Predicted Functional Partners:
lypla2
Lysophospholipase 2.
    
 0.942
lypla1
Lysophospholipase 1.
    
 0.942
LOC111238928
Uncharacterized protein.
  
 
 0.933
pnpla6
Patatin-like phospholipase domain containing 6.
  
 
 0.933
LOC111222494
Choline kinase alpha.
    
 0.929
LOC111228401
Choline kinase beta.
    
 0.929
chat
Choline O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family.
   
 
 0.919
LOC111219604
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
   
 
 0.919
ache
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
    
 0.916
LOC111224923
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
    
 0.916
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.