STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221564Plug_translocon domain-containing protein. (476 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.999
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.994
sec61g
SEC61 translocon gamma subunit.
   
 0.993
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.991
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.990
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.989
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.989
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.989
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.989
rpl35
Ribosomal protein L35.
  
 
 0.987
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.