STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111218786Tissue factor pathway inhibitor. (287 aa)    
Predicted Functional Partners:
LOC111233300
Uncharacterized protein.
     
 0.781
f3
Coagulation factor IIIa.
     
 0.736
f2
Coagulation factor II (thrombin); Belongs to the peptidase S1 family.
    
 0.726
proc
Protein C (inactivator of coagulation factors Va and VIIIa), a.
    
 0.608
hgfac
HGF activator.
    
 0.590
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
   
 
 0.582
plg
Plasminogen; Belongs to the peptidase S1 family.
    
 0.577
LOC111235522
Coagulation factor X.
    
 0.570
LOC111235523
Coagulation factor VIIi.
    
 0.570
LOC111235548
Coagulation factor VII.
    
 0.570
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.