STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111218999Sortilin. (825 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.940
nts
Neurotensin.
    
 
 0.933
LOC111224697
Sortilin.
  
  
 
0.904
LOC111221539
Sortilin.
  
  
 
0.901
Bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
    
 
 0.769
LOC111217770
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 
 0.752
LOC111218944
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.746
psmb1
Proteasome subunit beta.
    
 
 0.736
psma1
Proteasome subunit alpha type.
    
 
 0.736
psma8
Proteasome subunit alpha type.
 
  
 
 0.736
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.