STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube2j1Ubiquitin-conjugating enzyme E2, J1. (324 aa)    
Predicted Functional Partners:
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.852
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
   
0.850
trip12
Thyroid hormone receptor interactor 12.
   
 0.838
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.832
ube2s
Ubiquitin-conjugating enzyme E2S; Belongs to the ubiquitin-conjugating enzyme family.
     
0.822
uba5
Ubiquitin-like modifier activating enzyme 5.
   
 0.795
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 0.795
ube2h
Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
   
 0.792
UBE2H
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.792
LOC111235132
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.781
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.