STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbxl4F-box and leucine-rich repeat protein 4. (613 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.879
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.823
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.725
LOC111228608
COMM domain containing 4.
    
 0.698
LOC111226669
COMM domain containing 5.
     
 0.681
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.678
LOC111224075
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.671
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.671
LOC111235685
NEDD8 ubiquitin like modifier.
    
 0.668
LOC111223799
Ubiquitin-like domain-containing protein.
    
 0.668
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.