STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39ADExD-box helicase 39A. (346 aa)    
Predicted Functional Partners:
thoc2
THO complex 2.
   
 0.929
sarnp
SAP domain containing ribonucleoprotein.
   
 0.925
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
0.919
alyref
Aly/REF export factor.
   
 0.916
thoc5
THO complex 5.
   
 0.893
ALYREF
RRM domain-containing protein.
   
 0.890
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.887
thoc1
THO complex 1.
   
 0.872
thoc7
THO complex 7.
   
 0.850
magoh
Mago homolog, exon junction complex subunit.
   
 0.842
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.