STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000012498Charged multivesicular body protein 2A. (220 aa)    
Predicted Functional Partners:
chmp2b
Charged multivesicular body protein 2Bb.
   
0.984
chmp1a
Charged multivesicular body protein 1A.
   
0.983
LOC111226609
Uncharacterized protein.
   
0.983
chmp1b
Chromatin modifying protein 1B.
   
0.983
chmp3
Charged multivesicular body protein 3.
   
0.981
ist1
IST1 factor associated with ESCRT-III.
    
 0.917
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.903
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.903
MLKL
Mixed lineage kinase domain like pseudokinase.
    
 0.903
LOC111226315
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.903
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.