STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228436Calcium and integrin binding family member 2. (187 aa)    
Predicted Functional Partners:
LOC111221225
Transmembrane channel-like protein.
    
 0.834
TMC1
Transmembrane channel-like protein.
    
 0.834
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.672
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.672
nin
Ninein (GSK3B interacting protein).
    
 
 0.540
Tmie
Transmembrane inner ear.
     
 0.540
wdr90
WD repeat domain 90.
    
 0.486
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.484
lum
Lumican.
    
 0.472
LOC111221603
LHFPL tetraspan subfamily member 5a.
   
 
 0.471
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.