STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228438Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (454 aa)    
Predicted Functional Partners:
LOC111219934
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.991
ACO2
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.991
LOC111235030
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.979
LOC111219061
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.979
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.979
LOC111235214
Oxoglutarate dehydrogenase like.
  
 0.974
LOC111236935
Transket_pyr domain-containing protein.
  
 0.974
ogdh
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
  
 0.974
aco1
Aconitase 1, soluble; Belongs to the aconitase/IPM isomerase family.
  
 0.958
idh1
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.956
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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