LOC111229066 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111229066

Uncharacterized protein. (402 aa)

Predicted Functional Partners:

LOC111237521

0.871

hgd

0.762

fgg

0.756

fgb

0.704

LOC111234704

0.565

agxt2

0.565

LOC111221390

0.537

serpinf2

0.537

LOC111231564

0.487

LOC111235622

0.487

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111221390	LOC111229066	ENSSDUP00000008439	ENSSDUP00000012648	SERPIN domain-containing protein; Belongs to the serpin family.	Uncharacterized protein.	0.537
LOC111221390	LOC111237521	ENSSDUP00000008439	ENSSDUP00000028503	SERPIN domain-containing protein; Belongs to the serpin family.	Fibrinogen alpha chain.	0.702
LOC111221390	fgb	ENSSDUP00000008439	ENSSDUP00000005695	SERPIN domain-containing protein; Belongs to the serpin family.	Fibrinogen beta chain.	0.485
LOC111221390	fgg	ENSSDUP00000008439	ENSSDUP00000025204	SERPIN domain-containing protein; Belongs to the serpin family.	Fibrinogen gamma chain.	0.540
LOC111221390	hgd	ENSSDUP00000008439	ENSSDUP00000003827	SERPIN domain-containing protein; Belongs to the serpin family.	Homogentisate 1,2-dioxygenase.	0.513
LOC111229066	LOC111221390	ENSSDUP00000012648	ENSSDUP00000008439	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.537
LOC111229066	LOC111231564	ENSSDUP00000012648	ENSSDUP00000008371	Uncharacterized protein.	TGc domain-containing protein.	0.487
LOC111229066	LOC111234704	ENSSDUP00000012648	ENSSDUP00000022375	Uncharacterized protein.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.565
LOC111229066	LOC111235622	ENSSDUP00000012648	ENSSDUP00000010304	Uncharacterized protein.	Coagulation factor XIII, A1 polypeptide b.	0.487
LOC111229066	LOC111237521	ENSSDUP00000012648	ENSSDUP00000028503	Uncharacterized protein.	Fibrinogen alpha chain.	0.871
LOC111229066	agxt2	ENSSDUP00000012648	ENSSDUP00000022448	Uncharacterized protein.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.565
LOC111229066	fgb	ENSSDUP00000012648	ENSSDUP00000005695	Uncharacterized protein.	Fibrinogen beta chain.	0.704
LOC111229066	fgg	ENSSDUP00000012648	ENSSDUP00000025204	Uncharacterized protein.	Fibrinogen gamma chain.	0.756
LOC111229066	hgd	ENSSDUP00000012648	ENSSDUP00000003827	Uncharacterized protein.	Homogentisate 1,2-dioxygenase.	0.762
LOC111229066	serpinf2	ENSSDUP00000012648	ENSSDUP00000016328	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.537
LOC111231564	LOC111229066	ENSSDUP00000008371	ENSSDUP00000012648	TGc domain-containing protein.	Uncharacterized protein.	0.487
LOC111234704	LOC111229066	ENSSDUP00000022375	ENSSDUP00000012648	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.565
LOC111234704	hgd	ENSSDUP00000022375	ENSSDUP00000003827	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Homogentisate 1,2-dioxygenase.	0.737
LOC111235622	LOC111229066	ENSSDUP00000010304	ENSSDUP00000012648	Coagulation factor XIII, A1 polypeptide b.	Uncharacterized protein.	0.487
LOC111237521	LOC111221390	ENSSDUP00000028503	ENSSDUP00000008439	Fibrinogen alpha chain.	SERPIN domain-containing protein; Belongs to the serpin family.	0.702