STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r8Protein phosphatase 1, regulatory subunit 8b. (349 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
      
 0.695
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.693
LOC111217471
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.693
LOC111219951
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.693
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.655
LOC111225507
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.655
LOC111226896
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 
 0.655
acbd3
Acyl-Coenzyme A binding domain containing 3.
      
 0.647
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.647
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
   
 
 0.615
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.