STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsb4SplA/ryanodine receptor domain and SOCS box containing 4a. (278 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.865
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.676
mycbp2
MYC binding protein 2.
    
 
 0.660
LOC111216894
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.616
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.616
pawr
PRKC, apoptosis, WT1, regulator.
    
 
 0.562
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.561
rnf7
Ring finger protein 7.
    
 0.551
socs5
Suppressor of cytokine signaling 5b.
     
 0.515
LOC111217678
Elongin B.
    
 0.505
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.