STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000013726PKD domain-containing protein. (233 aa)    
Predicted Functional Partners:
pkd2
Polycystic kidney disease 2.
    
 0.846
pkd2l1
Polycystic kidney disease 2-like 1.
    
 0.845
myot
Myotilin.
    
 0.761
exoc5
Exocyst complex component 5.
     
 0.588
exoc4
Exocyst complex component 4.
     
 0.519
tsc2
TSC complex subunit 2.
   
  
 0.505
nphp1
Nephronophthisis 1.
   
 
 0.497
rtf2
Replication termination factor 2.
   
  
 0.496
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.478
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.444
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.