STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228601Arrestin domain containing 1a. (460 aa)    
Predicted Functional Partners:
LOC111235661
Thioredoxin; Belongs to the thioredoxin family.
    
 0.702
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.577
ENSSDUP00000026339
UEV domain-containing protein.
    
 
 0.525
tsg101
Tumor susceptibility 101a.
    
 
 0.525
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.482
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.482
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.439
nedd4
E3 ubiquitin-protein ligase.
    
 
 0.439
vps37a
VPS37A subunit of ESCRT-I.
    
 
 0.422
mrps18b
Mitochondrial ribosomal protein S18B.
      
 0.416
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.