STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chatCholine O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family. (661 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
   
 
 0.919
LOC111222494
Choline kinase alpha.
 
 
 
  0.902
Phospho1
Phosphatase, orphan 1.
     
 0.902
LOC111228401
Choline kinase beta.
 
 
 
  0.901
LOC111219604
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.901
LOC111220061
Uncharacterized protein.
     
 0.901
rpp14
Ribonuclease P/MRP 14 subunit.
   
 0.754
LOC111231890
Sterol carrier protein 2b.
   
 0.735
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.735
ENSSDUP00000026324
MFS domain-containing protein.
 
 
  
 0.688
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.