STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbkbp1TBK1 binding protein 1. (580 aa)    
Predicted Functional Partners:
LOC111220854
Tumor necrosis factor a (TNF superfamily, member 2).
    
 
 0.918
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
    
 
 0.860
tbk1
TANK-binding kinase 1.
    
 
 0.860
calcoco2
SKICH domain-containing protein.
    
 
 0.807
tank
TBD domain-containing protein.
      
 0.650
LOC111220255
Protein kinase domain-containing protein.
    
 
 0.565
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 
 0.565
LOC111234378
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 
 0.565
rb1cc1
RB1-inducible coiled-coil 1.
    
 
 0.478
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.