STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD63Ankyrin repeat domain 63. (536 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.581
LOC111221153
Serine/threonine-protein phosphatase.
    
 0.581
ppp6r2
Protein phosphatase 6, regulatory subunit 2b.
    
 0.542
LOC111224522
Protein phosphatase 6, regulatory subunit 2a.
    
 0.542
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.542
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.488
ift81
Intraflagellar transport 81 homolog.
    
 0.467
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.450
ift88
Intraflagellar transport 88 homolog.
   
 0.445
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.438
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.